Freelance nerd, writer, environment builder. Did Plasma Physics.

EMOD Setup

Institute for Disease Modeling

Required packages, from PrepareLinuxEnvironment.sh. Link libmpich10 paths to current versions of the library—maybe this will work.

apt-get -qq update
apt-get install libboost-mpi-dev scons mpich libmpich-dev xauth git-lfs pigz
conda install pyyaml xlrd

cd /usr/lib/x86_64-linux-gnu
ln -fs libmpichcxx.so libmpichcxx.so.10
ln -fs libmpich.so libmpich.so.10
ln -fs libopa.so libopa.so.1
ln -fs libmpl.so libmpl.so.1

Clone EMOD, and untar the input data saved in the Appendix.

git clone https://github.com/InstituteforDiseaseModeling/EMOD
cd EMOD
git checkout v2.18.0

cd /
pigz -dc EMOD-InputData.tar.gz | tar -xf -

Link input data.

ln -s /EMOD-InputData /EMOD/InputData

Download the executable file, set +x.

cd /usr/local/bin
wget https://github.com/InstituteforDiseaseModeling/EMOD/releases/download/v2.18.0/Eradication
chmod +x Eradication